Table 5 The number of differentially expressed (DE) contigs among RNA-seq library comparisons related to a sample of pathways associated with plant-pathogen/microbe interactions. The pathway (KAAS), library comparison, and the number of contigs involved are given
KAAS Pathway | FSg3 × FSg6 | FSg3 × DPg3 | FSg6 × DPg3 |
|---|---|---|---|
Vibrio cholerae infection | 1 | 5 | 5 |
Streptomycin biosynthesis | 0 | 3 | 2 |
Plant-pathogen interaction | 0 | 1 | 1 |
Antigen processing and presentation | 0 | 1 | 1 |
Biosynthesis of ansamycins | 0 | 1 | 1 |
Biosynthesis of vancomycin group antibiotics | 0 | 1 | 1 |
Metabolism of xenobiotics by cytochrome P450 | 0 | 1 | 1 |
Tetracycline biosynthesis | 0 | 1 | 1 |