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Table 5 The number of differentially expressed (DE) contigs among RNA-seq library comparisons related to a sample of pathways associated with plant-pathogen/microbe interactions. The pathway (KAAS), library comparison, and the number of contigs involved are given

From: Organism-environment interactions and differential gene expression patterns among open-coastal and estuarine populations of Porphyra umbilicalis Kützing (Rhodophyta) in the Northwest Atlantic

KAAS Pathway FSg3 × FSg6 FSg3 × DPg3 FSg6 × DPg3
Vibrio cholerae infection 1 5 5
Streptomycin biosynthesis 0 3 2
Plant-pathogen interaction 0 1 1
Antigen processing and presentation 0 1 1
Biosynthesis of ansamycins 0 1 1
Biosynthesis of vancomycin group antibiotics 0 1 1
Metabolism of xenobiotics by cytochrome P450 0 1 1
Tetracycline biosynthesis 0 1 1