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Table 2 Summary of differentially expressed (DE) contigs among the comparisons of the three RNA-seq libraries from Porphyra umbilicalis. Maximum fold difference is calculated as the fold-change in RPKM, or the reads per kilobase of exon model per million mapped reads, and excludes fold-changes in reads that were not present in one library

From: Organism-environment interactions and differential gene expression patterns among open-coastal and estuarine populations of Porphyra umbilicalis Kützing (Rhodophyta) in the Northwest Atlantic

Library comparison No. of contigs with at least a two-fold difference in expression Maximum fold difference in expression
FSg3 × FSg6 299 1802
FSg3 × DPg3 978 4257
FSg6 × DPg3 1047 5054