Table 3 Allelic profiles of the seven housekeeping genes used in MLST analysis
Gene | Size of fragment analyzed | Coverage of complete CDS (%) | Number of alleles | Number of polymorphic sites | Percentage of polymorphic sites | Avg G + C content (%) | DI | dN/dS ratio |
|---|---|---|---|---|---|---|---|---|
glpF | 384 | 46.6 | 18 | 146 | 38.0 | 50.0 | 0.972 | 0.061 |
ilvD | 470 | 28.0 | 16 | 164 | 34.9 | 54.5 | 0.957 | 0.040 |
pta | 414 | 42.6 | 15 | 105 | 25.4 | 51.4 | 0.942 | 0.020 |
purH | 399 | 25.9 | 17 | 137 | 34.3 | 50.4 | 0.96 | 0.080 |
pycA | 399 | 11.6 | 19 | 168 | 42.1 | 49.6 | 0.966 | 0.048 |
rpoD | 384 | 34.4 | 11 | 108 | 28.1 | 49.2 | 0.908 | 0.001 |
tpiA | 420 | 55.1 | 13 | 89 | 21.2 | 49.3 | 0.932 | 0.041 |