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Table 4 The percentages of differentially expressed (DE) contigs annotated by BLAST2GO from each library comparison, as well as the percentages of DE contigs assigned GO annotations by BLAST2GO. The percentages of GO-annotated contigs from each of the primary categories biological processes, molecular function, and cellular components, as well as the three most populated secondary categories

From: Organism-environment interactions and differential gene expression patterns among open-coastal and estuarine populations of Porphyra umbilicalis Kützing (Rhodophyta) in the Northwest Atlantic

Library comparison Percent of DE contigs with significant hits (evalue < 1e−10) (%) Percent of DE contigs assigned GO annotations (%) Primary categories Secondary categories
FSg3 × FSg6 41 92 33% biological processes 38% molecular function 29% cellular components 13% metabolic processes 11% catalytic activity 11% cellular processes
FSg3 × DPg3 62 55 39% biological processes 20% molecular function 41% cellular components 45% metabolic processes 44% cellular processes 42% cell function
FSg6 × DPg3 60 47 37% biological processes 24% molecular functions 39% cellular components 46% metabolic processes 44% cellular processes 40% cell function FDR40) cell parts